Bringing Bayesian Models to Life empowers the reader to extend, enhance, and implement statistical models for ecological and environmental data analysis. We open the black box and show the reader how to connect modern statistical models to computer algorithms. These algorithms allow the user to fit models that answer their scientific questions without needing to rely on automated Bayesian software. We show how to handcraft statistical models that are useful in ecological and environmental science including: linear and generalized linear models, spatial and time series models, occupancy and capture-recapture models, animal movement models, spatio-temporal models, and integrated population-models. Features: R code implementing algorithms to fit Bayesian models using real and simulated data examples. A comprehensive review of statistical models commonly used in ecological and environmental science. Overview of Bayesian computational methods such as importance sampling, MCMC, and HMC. Derivations of the necessary components to construct statistical algorithms from scratch. Bringing Bayesian Models to Life contains a comprehensive treatment of models and associated algorithms for fitting the models to data. We provide detailed and annotated R code in each chapter and apply it to fit each model we present to either real or simulated data for instructional purposes. Our code shows how to create every result and figure in the book so that readers can use and modify it for their own analyses. We provide all code and data in an organized set of directories available at the authors' websites.

Bringing Bayesian Models to Life empowers the reader to extend, enhance, and implement statistical models for ecological and environmental data analysis. We open the black box and show the reader how to connect modern statistical models to computer algorithms. These algorithms allow the user to fit models that answer their scientific questions without needing to rely on automated Bayesian software. We show how to handcraft statistical models that are useful in ecological and environmental science including: linear and generalized linear models, spatial and time series models, occupancy and capture-recapture models, animal movement models, spatio-temporal models, and integrated population-models. Features: R code implementing algorithms to fit Bayesian models using real and simulated data examples. A comprehensive review of statistical models commonly used in ecological and environmental science. Overview of Bayesian computational methods such as importance sampling, MCMC, and HMC. Derivations of the necessary components to construct statistical algorithms from scratch. Bringing Bayesian Models to Life contains a comprehensive treatment of models and associated algorithms for fitting the models to data. We provide detailed and annotated R code in each chapter and apply it to fit each model we present to either real or simulated data for instructional purposes. Our code shows how to create every result and figure in the book so that readers can use and modify it for their own analyses. We provide all code and data in an organized set of directories available at the authors' websites.

To date, statistics has tended to be neatly divided into two theoretical approaches or frameworks: frequentist (or classical) and Bayesian. Scientists typically choose the statistical framework to analyse their data depending on the nature and complexity of the problem, and based on their personal views and prior training on probability and uncertainty. Although textbooks and courses should reflect and anticipate this dual reality, they rarely do so. This accessible textbook explains, discusses, and applies both the frequentist and Bayesian theoretical frameworks to fit the different types of statistical models that allow an analysis of the types of data most commonly gathered by life scientists. It presents the material in an informal, approachable, and progressive manner suitable for readers with only a basic knowledge of calculus and statistics. Statistical Modeling with R is aimed at senior undergraduate and graduate students, professional researchers, and practitioners throughout the life sciences, seeking to strengthen their understanding of quantitative methods and to apply them successfully to real world scenarios, whether in the fields of ecology, evolution, environmental studies, or computational biology.

Applied Statistical Modelling for Ecologists provides a gentle introduction to the essential models of applied statistics: linear models, generalized linear models, mixed and hierarchical models. All models are fit with both a likelihood and a Bayesian approach, using several powerful software packages widely used in research publications: JAGS, NIMBLE, Stan, and TMB. In addition, the foundational method of maximum likelihood is explained in a manner that ecologists can really understand. This book is the successor of the widely used Introduction to WinBUGS for Ecologists (Kéry, Academic Press, 2010). Like its parent, it is extremely effective for both classroom use and self-study, allowing students and researchers alike to quickly learn, understand, and carry out a very wide range of statistical modelling tasks. The examples in Applied Statistical Modelling for Ecologists come from ecology and the environmental sciences, but the underlying statistical models are very widely used by scientists across many disciplines. This book will be useful for anybody who needs to learn and quickly become proficient in statistical modelling, with either a likelihood or a Bayesian focus, and in the model-fitting engines covered, including the three latest packages NIMBLE, Stan, and TMB. - Contains a concise and gentle introduction to probability and applied statistics as needed in ecology and the environmental sciences - Covers the foundations of modern applied statistical modelling - Gives a comprehensive, applied introduction to what currently are the most widely used and most exciting, cutting-edge model fitting software packages: JAGS, NIMBLE, Stan, and TMB - Provides a highly accessible applied introduction to the two dominant methods of fitting parametric statistical models: maximum likelihood and Bayesian posterior inference - Details the principles of model building, model checking and model selection - Adopts a "Rosetta Stone" approach, wherein understanding of one software, and of its associated language, will be greatly enhanced by seeing the analogous code in other engines - Provides all code available for download for students, at https://www.elsevier.com/books-and-journals/book-companion/9780443137150

Integrated Population Models: Theory and Ecological Applications with R and JAGS is the first book on integrated population models, which constitute a powerful framework for combining multiple data sets from the population and the individual levels to estimate demographic parameters, and population size and trends. These models identify drivers of population dynamics and forecast the composition and trajectory of a population. Written by two population ecologists with expertise on integrated population modeling, this book provides a comprehensive synthesis of the relevant theory of integrated population models with an extensive overview of practical applications, using Bayesian methods by means of case studies. The book contains fully-documented, complete code for fitting all models in the free software, R and JAGS. It also includes all required code for pre- and post-model-fitting analysis. Integrated Population Models is an invaluable reference for researchers and practitioners involved in population analysis, and for graduate-level students in ecology, conservation biology, wildlife management, and related fields. The text is ideal for self-study and advanced graduate-level courses. - Offers practical and accessible ecological applications of IPMs (integrated population models) - Provides full documentation of analyzed code in the Bayesian framework - Written and structured for an easy approach to the subject, especially for non-statisticians

Until recently, the Arctic was almost impossible for anyone other than indigenous peoples and explorers to traverse. Pervasive Arctic sea ice and harsh climatological conditions meant that the region was deemed incapable of supporting industrial activity or a Western lifestyle. In the last decade, however, that longstanding reality has been dramatically and permanently altered. Receding sea ice, coupled with growing geopolitical disputes over Arctic resources, territory, and transportation channels, has stimulated efforts to exploit newly-open waterways, to identify and extract desirable resources, and to leverage industrial, commercial, and transportation opportunities emerging throughout the region. This book presents papers from the NATO Advanced Research Workshop (ARW) Governance for Cyber Security and Resilience in the Arctic. Held in Rovaniemi, Finland, from 27-30 January 2019, the workshop brought together top scholars in cybersecurity risk assessment, governance, and resilience to discuss potential analytical and governing strategies and offer perspectives on how to improve critical Arctic infrastructure against various human and natural threats. The book is organized in three sections according to topical group and plenary discussions at the meeting on: cybersecurity infrastructure and threats, analytical strategies for infrastructure threat absorption and resilience, and legal frameworks and governance options to promote cyber resilience. Summaries and detailed analysis are included within each section as summary chapters in the book. The book provides a background on analytical tools relevant to risk and resilience analytics, including risk assessment, decision analysis, supply chain management and resilience analytics. It will allow government, native and civil society groups, military stakeholders, and civilian practitioners to understand better on how to enhance the Arctic’s resilience against various natural and anthropogenic challenges.

At least since Darwin argued that the difference in cognitive abilities between animals and humans is one of degree and not of kind, the study of animal cognition has been an active and dynamic subfield of behavioral sciences. It has, however, been based almost entirely on experimental studies of animals in captivity and belongs - as a field - more snugly in the realm of Psychology (or Ethology), with relatively little application to understanding the behavior of animals in the wild. Movement Ecology, in contrast, is a more recent branch of Ecology devoted almost entirely to the analysis of animal movements in the wild. Technological developments allow for animals to be tracked in the wild in ever-increasing numbers, precision, and duration. Movement ecology has, to some extent, “chased the data”, reflecting the practical need to analyze and interpret those data. Much of the most important developments of recent decades are devoted to dealing with the trickier aspects of the statistical analysis of movement data - which in their multidimensionality, autocorrelation, gappiness and measurement error, and behavioral complexity pose no shortage of hairy statistical problems.

This volume is concerned with digital human modeling. The utility of this area of research is to aid the design of systems that are benefitted from reducing the need for physical prototyping and incorporating ergonomics and human factors earlier in design processes. Digital human models are representations of some aspects of a human that can be ins

An exploration of how computer algorithms can be applied to our everyday lives to solve common decision-making problems and illuminate the workings of the human mind. What should we do, or leave undone, in a day or a lifetime? How much messiness should we accept? What balance of the new and familiar is the most fulfilling? These may seem like uniquely human quandaries, but they are not. Computers, like us, confront limited space and time, so computer scientists have been grappling with similar problems for decades. And the solutions they’ve found have much to teach us. In a dazzlingly interdisciplinary work, Brian Christian and Tom Griffiths show how algorithms developed for computers also untangle very human questions. They explain how to have better hunches and when to leave things to chance, how to deal with overwhelming choices and how best to connect with others. From finding a spouse to finding a parking spot, from organizing one’s inbox to peering into the future, Algorithms to Live By transforms the wisdom of computer science into strategies for human living.