This new volume of Methods in Enzymology continues the legacy of this premier serial with quality chapters authored by leaders in the field. This volume covers microbial metagenomics, metatranscriptomics, and metaproteomics, and includes chapters on such topics as in-solution FISH for single cell genome preparation, preparation of BAC libraries from marine microbial community DNA, and preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton. - Continues the legacy of this premier serial with quality chapters authored by leaders in the field - Covers microbial metagenomics, metatranscriptomics, and metaproteomics - Contains chapters on such topics as in-solution fluorescence in situ hybridization (FISH) for single cell genome preparation, preparation of BAC libraries from marine microbial community DNA, and preparation of microbial community cDNA for metatranscriptomic analysis in marine plankton

The book emphasizes role of functional microbes in soil to improve fertility and plant health in agro-ecosystem. In this compendium main emphasis is on occurrence and distribution of microbial communities, In situ active microbial quorum in rhizosphere, metratranscriptomics for microflora- and fauna, and fnctional diversity in rhizosphere. The book also highlights the importance of PGPRs in rhizosphere, root endotrophic microbes, functional niche under biotic stress, functional niche under abiotic stress, functional root derived signals, as well as functional microbe derived signals. Approaches deployed in metatranscriptomics, and molecular Tools used in rhizosphere are also discussed in detail. The book presents content is useful for students, academicians, researchers working on soil rhizosphere and as a policy document on sustenance of agriculture.

Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics, Three Volume Set combines elements of computer science, information technology, mathematics, statistics and biotechnology, providing the methodology and in silico solutions to mine biological data and processes. The book covers Theory, Topics and Applications, with a special focus on Integrative –omics and Systems Biology. The theoretical, methodological underpinnings of BCB, including phylogeny are covered, as are more current areas of focus, such as translational bioinformatics, cheminformatics, and environmental informatics. Finally, Applications provide guidance for commonly asked questions. This major reference work spans basic and cutting-edge methodologies authored by leaders in the field, providing an invaluable resource for students, scientists, professionals in research institutes, and a broad swath of researchers in biotechnology and the biomedical and pharmaceutical industries. Brings together information from computer science, information technology, mathematics, statistics and biotechnology Written and reviewed by leading experts in the field, providing a unique and authoritative resource Focuses on the main theoretical and methodological concepts before expanding on specific topics and applications Includes interactive images, multimedia tools and crosslinking to further resources and databases

The existence of living organisms in diverse ecosystems has been the focus of interest to human beings, primarily to obtain insights into the diversity and dynamics of the communities. This book discusses how the advent of novel molecular biology techniques, the latest being the next-generation sequencing technologies, helps to elucidate the identity of novel organisms, including those that are rare. The book highlights the fact that oceans, marine environments, rivers, mountains and the gut are ecosystems with great potential for obtaining bioactive molecules, which can be used in areas such as agriculture, food, medicine, water supplies and bioremediation. It then describes the latest research in metagenomics, a field that allows elucidation of the maximum biodiversity within an ecosystem, without the need to actually grow and culture the organisms. Further, it describes how human-associated microbes are directly responsible for our health and overall wellbeing.“/p>

This book offers an in-depth description of different groups of microbes (i.e. bacteria, protozoa, fungi and viruses) that exist in the rumen microbial community, and offers an overview of rumen microbiology, the rumen microbial ecosystem of domesticated ruminants, and rumen microbial diversity. It provides the latest concepts on rumen microbiology for scholars, researchers and teachers of animal and veterinary sciences. With this goal in mind, throughout the text we focus on specific areas related to the biology and complex interactions of the microbes in rumen, integrating significant key issues in each respective area. We also discuss rumen manipulation with plant secondary metabolites, microbial feed additives, utilization of organic acids, selective inhibition of harmful rumen microbes, and ‘omics’ approaches to manipulating rumen microbial functions. A section on the exploration and exploitation of rumen microbes addresses topics including the current state of knowledge on rumen metagenomics, rumen: an underutilized niche for industrially important enzymes and ruminal fermentations to produce fuels. We next turn our attention to commercial applications of rumen microbial enzymes and to the molecular characterization of euryarcheal communities within an anaerobic digester. A section on intestinal disorders and rumen microbes covers acidosis in cattle, urea/ ammonia metabolism in the rumen and nitrate/ nitrite toxicity in ruminant diets. Last, the future prospects of rumen microbiology are examined, based on the latest developments in this area. In summary, the book offers a highly systematic collection of essential content on rumen microbiology.

Microbial Diversity in the Genomic Era, Second Edition presents techniques used for microbial taxonomy and phylogeny, along with their applications and respective strengths and challenges. Though many advanced techniques for the identification of unknown bacterium are available in the genomic era, a far fewer number of the total microbial species have been discovered and identified to date. With that in mind, this book incorporates recently developed biosystematics methods and approaches to assess microbial taxonomy, with suitable recommendations for where to apply them across the range of bacterial identification and infectious disease research. Here, international researchers in the field first provide a broad overview of microbial genomics research and microbiome directed medicine, followed by sections on molecular tools for microbial diversity research, extremophilic microbial diversity, functional microbial diversity across application areas, microbial diversity and infectious disease research, and future directions for research. Step-by-step methodologies are provided for key techniques, along with applied case studies breaking down recent research studies into the practical components, illuminating pathways for new studies across the field. This new edition has been fully updated to address advances in the field of microbiome directed medicine, and whole genome sequencing for studying microbial diversity, considering both recent technological advances and new applications areas, from extremophile studies to the latest approaches in human microbiome analysis. - Instructs in techniques used for microbial taxonomy and phylogeny, with discussions of their applications and respective pros and cons - Reviews the evolving field of microbial typing and the genomic technologies that enable comparative metagenomic analysis of complex microbial environments - Covers microbiome directed translational research, as well as whole genome sequencing for studying microbial diversity, with newly added research protocols and case studies - Reviews future applications in the field of microbiome directed medicine - Features chapter contributions from global experts in the field

The book includes current and emerging concepts in the areas of environmental biotechnology such as pollution sources, control and measurement, solid waste management, bioremediation, biofuels, biosensors, bioleaching, conservation biotechnology and more. The book also includes recent innovations made in this field and incorporates case studies to help in understanding the concepts. This book applies principles from multidisciplinary sciences of environmental engineering, metabolic engineering, rDNA technology and omics to study the role of microbes and plants in tackling environmental issues. It also includes content related to risk assessment and environmental management systems. Each chapter provides problems and solutions of different topics with diagrammatic illustrations and tables for students, researchers and other professionals in environmental biotechnology. Explores cutting-edge technologies, including nanotechnology-based bioremediation, value-added products from waste and emerging techniques related to environmental risk assessment and monitoring Reviews the current methods being applied in the environment field for pollution control, waste management, biodegradation of organic and inorganic pollutants and so on Provides in-depth knowledge of the latest advancements in the field of environmental biotechnology such as bioleaching, biomining and advances in biotechnology-based conservation of biodiversity Introduces undergraduate and post-graduate students to basic concepts of environmental biotechnology and allied fields Discusses different products such as biofuels, biopolymers and biosensors that are being produced using biotechnological methods, thus contributing towards the goal of sustainable development Dr. Neetu Sharma is Assistant Professor in the Department of Biotechnology, GGDSD College, Chandigarh, India. The main thrust of her research centers on biotechnology, bioremediation and nanotechnology. Abhinashi Singh Sodhi is Assistant Professor in the Department of Biotechnology, GGDSD College, Chandigarh, India. His current research focuses on waste reduction, valorization and bioproduct formation. Dr. Navneet Batra is Associate Professor and Head, Department of Biotechnology, GGDSD College, Chandigarh, India. He has extensive academic and research experience of over 20 years with specialization in biotechnology and biochemical engineering.

A human being consists of a mammalian component and a multiplicity of microbes, collectively referred to as the "microbiota" or "microbiome," with which it has a symbiotic relationship. The microbiota is comprised of a variety of communities, the composition of each being dependent on the body site it inhabits. This community variation arises because the numerous locations on a human being provide very different environments, each of which favors the establishment of a distinct microbial community. Each community consists of bacteria, fungi and viruses with, in some cases, archaea and/or protozoa. It is increasingly being recognized that the indigenous microbiota plays an important role in maintaining the health of its human host. However, changes in the overall composition of a microbial community at a body site, or an increase in the proportion of a particular species in that community, can result in disease or other adverse consequences for the host. The Human Microbiota in Health and Disease: An Ecological and Community-Based Approach describes the nature of the various communities inhabiting humans as well as the important roles they play in human health and disease. It discusses techniques used to determine microbial community composition and features a chapter devoted to the many factors that underlie this mammalian–microbe symbiosis. Uniquely, the book adopts an ecological approach to examining the microbial community’s composition at a particular body site and why certain factors can shift a community from a eubiotic to a dysbiotic state. The book is for undergraduates and postgraduates on courses with a module on the indigenous microbiota of humans. It will also be useful to scientists, clinicians, and others seeking information on the human microbiota and its role in health and disease.