Model-Based Clustering, Classification, and Denisty Estimation Using mclust in R Model-based clustering and classification methods provide a systematic statistical approach to clustering, classification, and density estimation via mixture modeling. The model-based framework allows the problems of choosing or developing an appropriate clustering or classification method to be understood within the context of statistical modeling. The mclust package for the statistical environment R is a widely adopted platform implementing these model-based strategies. The package includes both summary and visual functionality, complementing procedures for estimating and choosing models. Key features of the book: An introduction to the model-based approach and the mclust R package A detailed description of mclust and the underlying modeling strategies An extensive set of examples, color plots, and figures along with the R code for reproducing them Supported by a companion website, including the R code to reproduce the examples and figures presented in the book, errata, and other supplementary material Model-Based Clustering, Classification, and Density Estimation Using mclust in R is accessible to quantitatively trained students and researchers with a basic understanding of statistical methods, including inference and computing. In addition to serving as a reference manual for mclust, the book will be particularly useful to those wishing to employ these model-based techniques in research or applications in statistics, data science, clinical research, social science, and many other disciplines.

Colorful example-rich introduction to the state-of-the-art for students in data science, as well as researchers and practitioners.

"This is a great overview of the field of model-based clustering and classification by one of its leading developers. McNicholas provides a resource that I am certain will be used by researchers in statistics and related disciplines for quite some time. The discussion of mixtures with heavy tails and asymmetric distributions will place this text as the authoritative, modern reference in the mixture modeling literature." (Douglas Steinley, University of Missouri) Mixture Model-Based Classification is the first monograph devoted to mixture model-based approaches to clustering and classification. This is both a book for established researchers and newcomers to the field. A history of mixture models as a tool for classification is provided and Gaussian mixtures are considered extensively, including mixtures of factor analyzers and other approaches for high-dimensional data. Non-Gaussian mixtures are considered, from mixtures with components that parameterize skewness and/or concentration, right up to mixtures of multiple scaled distributions. Several other important topics are considered, including mixture approaches for clustering and classification of longitudinal data as well as discussion about how to define a cluster Paul D. McNicholas is the Canada Research Chair in Computational Statistics at McMaster University, where he is a Professor in the Department of Mathematics and Statistics. His research focuses on the use of mixture model-based approaches for classification, with particular attention to clustering applications, and he has published extensively within the field. He is an associate editor for several journals and has served as a guest editor for a number of special issues on mixture models.

Large data sets arriving at every increasing speeds require a new set of efficient data analysis techniques. Data analytics are becoming an essential component for every organization and technologies such as health care, financial trading, Internet of Things, Smart Cities or Cyber Physical Systems. However, these diverse application domains give rise to new research challenges. In this context, the book provides a broad picture on the concepts, techniques, applications, and open research directions in this area. In addition, it serves as a single source of reference for acquiring the knowledge on emerging Big Data Analytics technologies.

Hands-on Machine Learning with R provides a practical and applied approach to learning and developing intuition into today’s most popular machine learning methods. This book serves as a practitioner’s guide to the machine learning process and is meant to help the reader learn to apply the machine learning stack within R, which includes using various R packages such as glmnet, h2o, ranger, xgboost, keras, and others to effectively model and gain insight from their data. The book favors a hands-on approach, providing an intuitive understanding of machine learning concepts through concrete examples and just a little bit of theory. Throughout this book, the reader will be exposed to the entire machine learning process including feature engineering, resampling, hyperparameter tuning, model evaluation, and interpretation. The reader will be exposed to powerful algorithms such as regularized regression, random forests, gradient boosting machines, deep learning, generalized low rank models, and more! By favoring a hands-on approach and using real word data, the reader will gain an intuitive understanding of the architectures and engines that drive these algorithms and packages, understand when and how to tune the various hyperparameters, and be able to interpret model results. By the end of this book, the reader should have a firm grasp of R’s machine learning stack and be able to implement a systematic approach for producing high quality modeling results. Features: · Offers a practical and applied introduction to the most popular machine learning methods. · Topics covered include feature engineering, resampling, deep learning and more. · Uses a hands-on approach and real world data.

This open access book covers aspects of unsupervised machine learning used for knowledge discovery in data science and introduces a data-driven approach to cluster analysis, the Databionic swarm (DBS). DBS consists of the 3D landscape visualization and clustering of data. The 3D landscape enables 3D printing of high-dimensional data structures. The clustering and number of clusters or an absence of cluster structure are verified by the 3D landscape at a glance. DBS is the first swarm-based technique that shows emergent properties while exploiting concepts of swarm intelligence, self-organization and the Nash equilibrium concept from game theory. It results in the elimination of a global objective function and the setting of parameters. By downloading the R package DBS can be applied to data drawn from diverse research fields and used even by non-professionals in the field of data mining.

The integration of geology with data science disciplines, such as spatial statistics, remote sensing, and geographic information systems (GIS), has given rise to a shift in many natural sciences schools, pushing the boundaries of knowledge and enabling new discoveries in geological processes and earth systems. Spatial analysis of geological data can be used to identify patterns and trends in data, to map spatial relationships, and to model spatial processes. R is a consolidated and yet growing statistical programming language with increasing value in spatial analysis often replacing, with advantage, GIS tools. By providing a comprehensive guide for geologists to harness the power of spatial analysis in R, Spatial Analysis in Geology Using R serves as a tool in addressing real-world problems, such as natural resource management, environmental conservation, and hazard prediction and mitigation. Features: Provides a practical and accessible overview of spatial analysis in geology using R Organised in three independent and complementary parts: Introduction to R, Spatial Analysis with R, and Spatial Statistics and Modelling Applied approach with many detailed examples and case studies using real geological data Presents a collection of R packages that are useful in many geological situations Does not assume any prior knowledge of R; all code are explained in detail Supplemented by a website with all data, code, and examples Spatial Analysis in Geology Using R will be useful to any geological researcher who has acquired basic spatial analysis skills, often using GIS, and is interested in deepening those skills through the use of R. It could be used as a reference by applied researchers and analysts in public, private, or third-sector industries. It could also be used to teach a course on the topic to graduate students or for self-study.

torch is an R port of PyTorch, one of the two most-employed deep learning frameworks in industry and research. It is also an excellent tool to use in scientific computations. It is written entirely in R and C/C++. Though still "young" as a project, R torch already has a vibrant community of users and developers. Experience shows that torch users come from a broad range of different backgrounds. This book aims to be useful to (almost) everyone. Globally speaking, its purposes are threefold: - Provide a thorough introduction to torch basics – both by carefully explaining underlying concepts and ideas, and showing enough examples for the reader to become "fluent" in torch. - Again with a focus on conceptual explanation, show how to use torch in deep-learning applications, ranging from image recognition over time series prediction to audio classification. - Provide a concepts-first, reader-friendly introduction to selected scientific-computation topics (namely, matrix computations, the Discrete Fourier Transform, and wavelets), all accompanied by torch code you can play with. Deep Learning and Scientific Computing with R torch is written with first-hand technical expertise and in an engaging, fun-to-read way.