This volume surveys advances in the study of adaptive radiation showing how molecular characters can be used to analyze the origin and pattern of diversification within a lineage in a non-circular fashion.

DNA can be extracted and sequenced from a diverse range of biological samples, providing a vast amount of information about evolution and ecology. The analysis of DNA sequences contributes to evolutionary biology at all levels, from dating the origin of the biological kingdoms to untangling family relationships. An Introduction to Molecular Evolution and Phylogenetics presents the fundamental concepts and intellectual tools you need to understand how the genome records information about evolutionary past and processes, how that information can be "read", and what kinds of questions we can use that information to answer. Starting with evolutionary principles, and illustrated throughout with biological examples, it is the perfect starting point on the journey to an understanding of the way molecular data is used in modern biology. Online Resource Centre The Online Resource Centre features: For registered adopters of the book: - Class plans for one-hour hands-on sessions associated with each chapter - Figures from the textbook to view and download

This book is the first comprehensive treatment of this subject.

This work provides a unified theory that addresses the important problem of the origin and maintenance of genetic variation in natural populations. With modern molecular techniques, variation is found in all species, sometimes at astonishingly high levels. Yet, despite these observations, the forces that maintain variation within and between species have been difficult subjects of study. Because they act very weakly and operate over vast time scales, scientists must rely on indirect inferences and speculative mathematical models. However, despite these obstacles, many advances have been made. The author's research in molecular genetics, evolution, and bio-mathematics has enabled him to draw on this work, and present a coherent and valuable view of the field. The book is divided into three parts. The first consists of three chapters on protein evolution, DNA evolution, and molecular mechanisms. This section reviews the experimental observations on genetic variation. The second part gives a unified treatment of the mathematical theory of selection in a fluctuating environment. The final two chapters combine the earlier assessments in a treatment of the scientific status of two competing theories for the maintenance of genetic variation. Steeped in the enormous advances population genetics has made over the past 25 years, this book has proven highly popular among human geneticists, biologists, evolutionary theorists, and bio-mathematicians.

The field of molecular evolution has experienced explosive growth in recent years due to the rapid accumulation of genetic sequence data, continuous improvements to computer hardware and software, and the development of sophisticated analytical methods. The increasing availability of large genomic data sets requires powerful statistical methods to analyse and interpret them, generating both computational and conceptual challenges for the field. Computational Molecular Evolution provides an up-to-date and comprehensive coverage of modern statistical and computational methods used in molecular evolutionary analysis, such as maximum likelihood and Bayesian statistics. Yang describes the models, methods and algorithms that are most useful for analysing the ever-increasing supply of molecular sequence data, with a view to furthering our understanding of the evolution of genes and genomes. The book emphasizes essential concepts rather than mathematical proofs. It includes detailed derivations and implementation details, as well as numerous illustrations, worked examples, and exercises. It will be of relevance and use to students and professional researchers (both empiricists and theoreticians) in the fields of molecular phylogenetics, evolutionary biology, population genetics, mathematics, statistics and computer science. Biologists who have used phylogenetic software programs to analyze their own data will find the book particularly rewarding, although it should appeal to anyone seeking an authoritative overview of this exciting area of computational biology.

Ecological and evolutionary genetics span many disciplines and virtually all levels of biological investigation, from the genetic information itself to the principles governing the complex organization of living things. The ideas and informa tion generated by ecological and evolutionary genetics provide the substance for strong inferences on the origins, changes and patterns of structural and functional organization in bio logical communi ties. It is the coordination of these ideas and thoughts that will provide the answers to many fundamental questions in biology. There is no doubt that Drosophilids provide strong model systems amenable to experimental manipulation and useful for testing pertinent hypotheses in ecological and evolutionary genetics. The chapters in this volume represent efforts to use Drosophila species for such a purpose. The volume consists of a dedication to William B. Heed, followed by four major sections: Ecological Genetics, Habitat Selection, Biochemical Genetics and Molecular Evolution. Each section is introduced by a short statement, and each chapter has an independent summary. The chapters contain the sub stance of talks given at a joint Australia-US workshop held January 5-10, 1989 at the University of New England, New South Wales, Australia. We are indebted to the Division of International Programs of the National Science Foundation (USA) and to the Science and Technology Collaboration Section of the Department of Industry, Technology and Commerce (Australia) for the provi sion of financial support under the US/Australia Science and Technology Agreement. Many people contributed to the preparation of this volume.

The common fruitfly, Drosophila, is the most extensively studied of all organisms in genetical research. Thus, it would appear to be the best model for achieving new insights. Its use in evolutionary studies has resulted in an explosion of knowledge which has never before been gathered into a single volume. This book spans the full range of evolutionary studies - population genetics, ecology, ecological genetics, speciation, phylogenetics, genome evolution, molecular; evolution, and development. In covering these topics, highlights of empirical research are emphasized and are put into the context of major issues in evolution.

One of this century's leading evolutionary biologists, Motoo Kimura revolutionized the field with his random drift theory of molecular evolution—the neutral theory—and his groundbreaking theoretical work in population genetics. This volume collects 57 of Kimura's most important papers and covers forty years of his diverse and original contributions to our understanding of how genetic variation affects evolutionary change. Kimura's neutral theory, first presented in 1968, challenged the notion that natural selection was the sole directive force in evolution. Arguing that mutations and random drift account for variations at the level of DNA and amino acids, Kimura advanced a theory of evolutionary change that was strongly challenged at first and that eventually earned the respect and interest of evolutionary biologists throughout the world. This volume includes the seminal papers on the neutral theory, as well as many others that cover such topics as population structure, variable selection intensity, the genetics of quantitative characters, inbreeding systems, and reversibility of changes by random drift. Background essays by Naoyuki Takahata examine Kimura's work in relation to its effects and recent developments in each area.

This volume is the twenty-ninth in this series, which includes twenty-eight numbered volumes and one unnumbered supplement. The editors continue to focus on critical reviews, commentaries, original papers, and controversies in of the reviews range from anthropology to evolutionary biology. The topics molecular evolution, population biology to paleobiology. Recent volumes have included a broad spectrum of chapters on such subjects as population biology, comparative morphology, paleobiology, molecular phy logenetics, developmental evolutionary biology, systematics, and the history of evolutionary biology. The editors continue to solicit manuscripts in all areas of evolutionary biology. Manuscripts should be sent to anyone of the following: Max K. Hecht, Department of Biology, Queens College of the City University of New York, Flushing, New York 11367; Ross 1. MacIntyre, Department of Genetics and Development, Cornell University, Ithaca, New York 14853; or Michael T. Clegg, Department of Botany and Plant Sciences, University of California, Riverside, California 92521. vii Contents 1. Homology and Embryonic Development Brian K. Hall Introduction .............................................. 1 A Brief History of the Concept of Homology ................. 1 von Baer's Laws ........................................ 4 Germ Layers and Ernst Haeckel ............................ 6 Embryology and Homology ............................... 7 Homology: An Unsolved Problem ............................ 8 Latent Homology ........................................ 8 Serial Homology ........................................ 9 Common Origins and Common Inductions ..................... 12 Mechanisms of Gastrulation ............................... 13 Origin of the Alimentary Canal ............................ 14 Origin of Germ Cells . . . . . . . . . . . . . . . . . . . . . . . . . . . 14 . . . . . . . . . . Induction of Meckel's Cartilage ............................ 15 Induction of the Lens of the Eye ........................... 16 Development of Internal and External Cheek Pouches .......... 18 Selection for Increased Tail Length in Mice .................. 19 Regeneration and Homology .... . . . . . . . . . . . . . . . . . . . . 20 . . . . . . .