The impact of molecular genetics on plant breeding and, consequently, agri culture, is potentially enonnous. Understanding and directing this potential im pact is crucial because of the urgent issues that we face concerning sustainable agriculture for a growing world population as well as conservation of the world's rapidly dwindling plant genetic resources. This book is largely devoted to the applications of genetic markers that have been developed by the application of molecular genetics to practical problems. These are known as DNA markers. They have gained a certain notoriety in foren sics, but can be used in a variety of practical situations. We are going through a period of accelerated breakthroughs in molecular ge netics. Therefore, the authors of each chapter were encouraged to speculate about both current bottlenecks and the future of their subfields of research. We can cer tainly apply molecular genetic tools and approaches to help resolve crucial ge netic resource problems that face humanity. However, little has been discussed with respect to when or how we should use such tools, nor to who specifically should use them; therefore, social and economic analyses are important in the planning stages of projects that are aimed at practical results.

This volume provides protocols on evidence for polyploidy and how it can be unveiled. Chapters guide readers through evolutionary experiments, measure effects of polyploidy, evidence for (remnants of) ancient WGDs, models of chromosome number evolution, population genomics approaches to study polyploidy, analysing genetic data from polyploid populations, Phylogenetic and phylogenomic methods, gene expression, gene regulation, unicellular alga (Chlamydomonas), and a fast-growing duckweed (Spirodela). Written in the format of the highly successful Methods in Molecular Biology series, each chapter includes an introduction to the topic, lists necessary materials and reagents, includes tips on troubleshooting and known pitfalls, and step-by-step, readily reproducible protocols. Authoritative and cutting-edge, Polyploidy: Method and Protocols aims to be of interest to experimental and computational (evolutionary) biologists, molecular biologists, and biotechnologists.

With recent technological advances, vast quantities of genetic and genomic data are being generated at an ever-increasing pace. The explosion in access to data has transformed the field of evolutionary genetics. A thorough understanding of evolutionary principles is essential for making sense of this, but new skill sets are also needed to handle and analyze big data. This contemporary textbook covers all the major components of modern evolutionary genetics, carefully explaining fundamental processes such as mutation, natural selection, genetic drift, and speciation. It also draws on a rich literature of exciting and inspiring examples to demonstrate the diversity of evolutionary research, including an emphasis on how evolution and selection has shaped our own species. Practical experience is essential for developing an understanding of how to use genetic and genomic data to analyze and interpret results in meaningful ways. In addition to the main text, a series of online tutorials using the R language serves as an introduction to programming, statistics, and analysis. Indeed the R environment stands out as an ideal all-purpose source platform to handle and analyze such data. The book and its online materials take full advantage of the authors' own experience in working in a post-genomic revolution world, and introduces readers to the plethora of molecular and analytical methods that have only recently become available. Evolutionary Genetics is an advanced but accessible textbook aimed principally at students of various levels (from undergraduate to postgraduate) but also for researchers looking for an updated introduction to modern evolutionary biology and genetics.

Ecological restoration, although a relatively new endeavour compared to other disciplines, has gained significant momentum during the last decade as accelerating global change becomes more apparent. It is now widely accepted by the scientific community that to avoid further devastating effects of climate change and biodiversity loss, humanity must determinedly move more to protect and restore natural ecosystems. Many restoration efforts of the past have been ad hoc, site and situation-specific and have often failed to achieve desired outcomes, but over the last decade, many countries are allocating increasingly significant amounts of financial investment towards restoration with the goal of achieving more systematic and predictable outcomes. Today, activities related to restoring ecosystems, natural assets and biodiversity are a global focus. This book covers a wide range of topics related to ecological restoration including for grasslands, wetlands, temperate and tropical forests and arid zones. Importantly, it also focuses on ecological restoration in human-disturbed landscapes such as for urban areas, farmlands, mine sites and transport corridors. It highlights the necessity for evidence-based approaches that are both nuanced and complementary with prescriptions for people-based restoration, that is socially inclusive and cognisant of historic and current community sentiment. Ambitious landscape and continental scale targets for ecological restoration have been set across the globe. However, without practical guidelines developed from restoration evaluations from the recent past to follow, future efforts are unlikely to be successful, nor -expected targets met. To that end, this book reviews and highlights a large number and variety of restoration stories from around the world. Most are presented as reader-friendly case studies, that feature innovative and systematic techniques for undertaking species-rich ecological restoration. Together they provide inspiration for current and future professionals and offer unique glimpses into state-of-the-art practice for this critically important discipline

Evolutionary biology has increasingly relied upon tools developed in molecular biology that allow for the structure and function of macromolecules to be used as data for exploring the patterns and processes of evolutionary change. Integrated Molecular Evolution, Second Edition is a textbook intended to expansively and comprehensive review evolutionary studies now routinely using molecular data. This new edition has been thoroughly updated and expanded, and provides a basic summary of evolutionary biology as well as a review of current phylogenetics and phylogenomics. Reflecting a burgeoning pedagogical landscape, this new edition includes nearly double the number of chapters, including a new section on molecular and bioinformatic methods. Dedicated chapters were added on: Evolution of the genetic code Mendelian genetics and population genetics Natural selection Horizontal gene transfers Animal development and plant development Cancer Extraction of biological molecules Analytical methods Sequencing methods and sequencing analyses Omics Phylogenetics and phylogenetic networks Protein trafficking Human genomics More than 400 illustrations appear in this edition, doubling the number included in the first edition, and over 100 of these diagrams are now in color. The second edition combines and integrates extensive summaries of genetics and evolutionary biology in a manner that is accessible for students at either the graduate or undergraduate level. It also provides both the basic foundations of molecular evolution, such as the structure and function of DNA, RNA and proteins, as well as more advanced chapters reviewing analytical techniques for obtaining sequences, and interpreting and archiving molecular and genomic data.

Spanning evolutionary science from its inception to its latest findings, from discoveries and data to philosophy and history, this book is the most complete, authoritative, and inviting one-volume introduction to evolutionary biology available. Clear, informative, and comprehensive in scope, Evolution opens with a series of major essays dealing with the history and philosophy of evolutionary biology, with major empirical and theoretical questions in the science, from speciation to adaptation, from paleontology to evolutionary development (evo devo), and concluding with essays on the social and political significance of evolutionary biology today. A second encyclopedic section travels the spectrum of topics in evolution with concise, informative, and accessible entries on individuals from Aristotle and Linneaus to Louis Leakey and Jean Lamarck; from T. H. Huxley and E. O. Wilson to Joseph Felsenstein and Motoo Kimura; and on subjects from altruism and amphibians to evolutionary psychology and Piltdown Man to the Scopes trial and social Darwinism. Readers will find the latest word on the history and philosophy of evolution, the nuances of the science itself, and the intricate interplay among evolutionary study, religion, philosophy, and society. Appearing at the beginning of the Darwin Year of 2009—the 200th anniversary of the birth of Charles Darwin and the 150th anniversary of the publication of the Origin of Species—this volume is a fitting tribute to the science Darwin set in motion.

This first volume in the series provides a detailed treatment in ecotoxicology and stresses why genetics is important in understanding if and how chemical contaminants affect populations. Written by an array of international contributors from various fields covering mammals, invertebrates, fish, plants, as well as molecular ecotoxicology, this book considers both ecological/evolutionary consequences and practical implications of the interplay between chemical toxicants and the genetic population. In broadening the understanding of ecological response, this resource ranges from molecular to classical genetics, from plant to animal, from asexual to sexual, touching on some fundamental issues of evolutionary biology. In addition, gaps in our present understanding of genetic and ecotoxicological processes and future research directions have been identified.

Advances in Genetics

Combining insights from observation, experimentation, and theory, The Origin, Expansion, and Demise of Plant Species offers a broad overview of species as dynamic entities that arise, have unique evolutionary histories, and ultimately go extinct. It begins with a review of species concepts and the exposition of a new concept; it then addresses plant speciation, the expansion of species from their narrow centers of origin, intraspecific differentiation, and contact zones between differentiated population systems. Special attention is given to the breakdown of cohesion among populations by reproductive and spatial barriers. Also, the ecological and genetic properties of small populations and fragmented population systems are discussed with a focus on the role of hybridization in the demise of species. It ends with an exploration of the longevity of species and the tempo of diversification, contrasting different groups of plants in these respects as well as in rates of chromosomal differentiation. This book provides a new synthesis of evolutionary biology and ecology. It examines species from their origins, then follows them through their expansion, differentiation and loss of cohesion, and decline and extinction. The stages in the lives of species are viewed through ecological and genetic theory, and topics typically addressed independently are woven into a continuous fabric. As the first synthetic treatment of the stages through which plant species pass, this book is very useful for botanists, evolutionary biologists, conservation biologists, as well as all curious students of the biological sciences.