Behavior Analysis with Machine Learning Using R introduces machine learning and deep learning concepts and algorithms applied to a diverse set of behavior analysis problems. It focuses on the practical aspects of solving such problems based on data collected from sensors or stored in electronic records. The included examples demonstrate how to perform common data analysis tasks such as: data exploration, visualization, preprocessing, data representation, model training and evaluation. All of this, using the R programming language and real-life behavioral data. Even though the examples focus on behavior analysis tasks, the covered underlying concepts and methods can be applied in any other domain. No prior knowledge in machine learning is assumed. Basic experience with R and basic knowledge in statistics and high school level mathematics are beneficial. Features: Build supervised machine learning models to predict indoor locations based on WiFi signals, recognize physical activities from smartphone sensors and 3D skeleton data, detect hand gestures from accelerometer signals, and so on. Program your own ensemble learning methods and use Multi-View Stacking to fuse signals from heterogeneous data sources. Use unsupervised learning algorithms to discover criminal behavioral patterns. Build deep learning neural networks with TensorFlow and Keras to classify muscle activity from electromyography signals and Convolutional Neural Networks to detect smiles in images. Evaluate the performance of your models in traditional and multi-user settings. Build anomaly detection models such as Isolation Forests and autoencoders to detect abnormal fish behaviors. This book is intended for undergraduate/graduate students and researchers from ubiquitous computing, behavioral ecology, psychology, e-health, and other disciplines who want to learn the basics of machine learning and deep learning and for the more experienced individuals who want to apply machine learning to analyze behavioral data.

torch is an R port of PyTorch, one of the two most-employed deep learning frameworks in industry and research. It is also an excellent tool to use in scientific computations. It is written entirely in R and C/C++. Though still "young" as a project, R torch already has a vibrant community of users and developers. Experience shows that torch users come from a broad range of different backgrounds. This book aims to be useful to (almost) everyone. Globally speaking, its purposes are threefold: - Provide a thorough introduction to torch basics – both by carefully explaining underlying concepts and ideas, and showing enough examples for the reader to become "fluent" in torch. - Again with a focus on conceptual explanation, show how to use torch in deep-learning applications, ranging from image recognition over time series prediction to audio classification. - Provide a concepts-first, reader-friendly introduction to selected scientific-computation topics (namely, matrix computations, the Discrete Fourier Transform, and wavelets), all accompanied by torch code you can play with. Deep Learning and Scientific Computing with R torch is written with first-hand technical expertise and in an engaging, fun-to-read way.

Rasch Measurement Theory Analysis in R provides researchers and practitioners with a step-by-step guide for conducting Rasch measurement theory analyses using R. It includes theoretical introductions to major Rasch measurement principles and techniques, demonstrations of analyses using several R packages that contain Rasch measurement functions, and sample interpretations of results. Features: Accessible to users with relatively little experience with R programming Reproducible data analysis examples that can be modified to accommodate users’ own data Accompanying e-book website with links to additional resources and R code updates as needed Features dichotomous and polytomous (rating scale) Rasch models that can be applied to data from a wide range of disciplines This book is designed for graduate students, researchers, and practitioners across the social, health, and behavioral sciences who have a basic familiarity with Rasch measurement theory and with R. Readers will learn how to use existing R packages to conduct a variety of analyses related to Rasch measurement theory, including evaluating data for adherence to measurement requirements, applying the dichotomous, Rating Scale, Partial Credit, and Many-Facet Rasch models, examining data for evidence of differential item functioning, and considering potential interpretations of results from such analyses.

Model-Based Clustering, Classification, and Denisty Estimation Using mclust in R Model-based clustering and classification methods provide a systematic statistical approach to clustering, classification, and density estimation via mixture modeling. The model-based framework allows the problems of choosing or developing an appropriate clustering or classification method to be understood within the context of statistical modeling. The mclust package for the statistical environment R is a widely adopted platform implementing these model-based strategies. The package includes both summary and visual functionality, complementing procedures for estimating and choosing models. Key features of the book: An introduction to the model-based approach and the mclust R package A detailed description of mclust and the underlying modeling strategies An extensive set of examples, color plots, and figures along with the R code for reproducing them Supported by a companion website, including the R code to reproduce the examples and figures presented in the book, errata, and other supplementary material Model-Based Clustering, Classification, and Density Estimation Using mclust in R is accessible to quantitatively trained students and researchers with a basic understanding of statistical methods, including inference and computing. In addition to serving as a reference manual for mclust, the book will be particularly useful to those wishing to employ these model-based techniques in research or applications in statistics, data science, clinical research, social science, and many other disciplines.

Learning a computer language like R can be either frustrating, fun or boring. Having fun requires challenges that wake up the learner’s curiosity but also provide an emotional reward for overcoming them. The book is designed so that it includes smaller and bigger challenges, in what I call playgrounds, in the hope that all readers will enjoy their path to R fluency. Fluency in the use of a language is a skill that is acquired through practice and exploration. For students and professionals in the biological sciences, humanities and many applied fields, recognizing the parallels between R and natural languages should help them feel at home with R. The approach I use is similar to that of a travel guide, encouraging exploration and describing the available alternatives and how to reach them. The intention is to guide the reader through the R landscape of 2024 and beyond. What is new in the second edition? Text expanded by more than 25% to include additional R features and gentler and more detailed explanations Contains 24 new diagrams and flowcharts, seven new tables, and revised text and code examples for clarity All three indexes were expanded, and answers to 28 frequently asked questions added What will you find in this book? Programming concepts explained as they apply to current R Emphasis on the role of abstractions in programming Few prescriptive rules—mostly the author’s preferences together with alternatives Presentation of the R language emphasizing the “R way of doing things” Tutoring for “programming in the small” using scripts for data analysis Explanation of the differences between R proper and extensions for data wrangling The grammar of graphics is described as a language for the construction of data visualisations Examples of data exchange between R and the foreign world using common file formats Coaching to become an independent R user, capable of writing original scripts and solving future challenges

This textbook shows how to bring theoretical concepts from finance and econometrics to the data. Focusing on coding and data analysis with R, we show how to conduct research in empirical finance from scratch. We start by introducing the concepts of tidy data and coding principles using the tidyverse family of R packages. We then provide the code to prepare common open source and proprietary financial data sources (CRSP, Compustat, Mergent FISD, TRACE) and organize them in a database. We reuse these data in all the subsequent chapters, which we keep as self-contained as possible. The empirical applications range from key concepts of empirical asset pricing (beta estimation, portfolio sorts, performance analysis, Fama-French factors) to modeling and machine learning applications (fixed effects estimation, clustering standard errors, difference-in-difference estimators, ridge regression, Lasso, Elastic net, random forests, neural networks) and portfolio optimization techniques. Highlights 1. Self-contained chapters on the most important applications and methodologies in finance, which can easily be used for the reader’s research or as a reference for courses on empirical finance. 2. Each chapter is reproducible in the sense that the reader can replicate every single figure, table, or number by simply copy-pasting the code we provide. 3. A full-fledged introduction to machine learning with tidymodels based on tidy principles to show how factor selection and option pricing can benefit from Machine Learning methods. 4. Chapter 2 on accessing and managing financial data shows how to retrieve and prepare the most important datasets in the field of financial economics: CRSP and Compustat. The chapter also contains detailed explanations of the most relevant data characteristics. 5. Each chapter provides exercises that are based on established lectures and exercise classes and which are designed to help students to dig deeper. The exercises can be used for self-studying or as a source of inspiration for teaching exercises.

A Criminologist's Guide to R: Crime by the Numbers introduces the programming language R and covers the necessary skills to conduct quantitative research in criminology. By the end of this book, a person without any prior programming experience can take raw crime data, be able to clean it, visualize the data, present it using R Markdown, and change it to a format ready for analysis. A Criminologist's Guide to R focuses on skills specifically for criminology such as spatial joins, mapping, and scraping data from PDFs, however any social scientist looking for an introduction to R for data analysis will find this useful. Key Features: Introduction to RStudio including how to change user preference settings. Basic data exploration and cleaning – subsetting, loading data, regular expressions, aggregating data. Graphing with ggplot2. How to make maps (hotspot maps, choropleth maps, interactive maps). Webscraping and PDF scraping. Project management – how to prepare for a project, how to decide which projects to do, best ways to collaborate with people, how to store your code (using git), and how to test your code.

Scientific research often starts with data collection. However, many researchers pay insufficient attention to this first step in their research. The author, researcher at Wageningen University and Research, often had to conclude that the data collected by fellow researchers were suboptimal, or in some cases even unsuitable for their aim. One reason is that sampling is frequently overlooked in statistics courses. Another reason is the lack of practical textbooks on sampling. Numerous books have been published on the statistical analysis and modelling of data using R, but to date no book has been published in this series on how these data can best be collected. This book fills this gap. Spatial Sampling with R presents an overview of sampling designs for spatial sample survey and monitoring. It shows how to implement the sampling designs and how to estimate (sub)population- and space-time parameters in R. Key features Describes classical, basic sampling designs for spatial survey, as well as recently developed, advanced sampling designs and estimators Presents probability sampling designs for estimating parameters for a (sub)population, as well as non-probability sampling designs for mapping Gives comprehensive overview of model-assisted estimators Covers Bayesian approach to sampling design Illustrates sampling designs with surveys of soil organic carbon, above-ground biomass, air temperature, opium poppy Explains integration of wall-to-wall data sets (e.g. remote sensing images) and sample data Data and R code available on github Exercises added making the book suitable as a textbook for students The target group of this book are researchers and practitioners of sample surveys, as well as students in environmental, ecological, agricultural science or any other science in which knowledge about a population of interest is collected through spatial sampling. This book helps to implement proper sampling designs, tailored to their problems at hand, so that valuable data are collected that can be used to answer the research questions.

-Written by the authors of key spatial R packages -Makes spatial data analysis more robust -Integrates with the tidyverse and comparable approaches -Includes many easily reproducible examples

ANOVA and Mixed Models: A Short Introduction Using R provides both the practitioner and researcher a compact introduction to the analysis of data from the most popular experimental designs. Based on knowledge from an introductory course on probability and statistics, the theoretical foundations of the most important models are introduced. The focus is on an intuitive understanding of the theory, common pitfalls in practice, and the application of the methods in R. From data visualization and model fitting, up to the interpretation of the corresponding output, the whole workflow is presented using R. The book does not only cover standard ANOVA models, but also models for more advanced designs and mixed models, which are common in many practical applications. Features Accessible to readers with a basic background in probability and statistics Covers fundamental concepts of experimental design and cause-effect relationships Introduces classical ANOVA models, including contrasts and multiple testing Provides an example-based introduction to mixed models Features basic concepts of split-plot and incomplete block designs R code available for all steps Supplementary website with additional resources and updates are available here. This book is primarily aimed at students, researchers, and practitioners from all areas who wish to analyze corresponding data with R. Readers will learn a broad array of models hand-in-hand with R, including the applications of some of the most important add-on packages.